PH01000022G1220's details annotation
1.Annotation
ICBR annotation: TBC domain containing protein, expressed
Blast result AT3G55020 : 0.00E+00
Blast annotation: Ypt/Rab-GAP domain of gyp1p superfamily protein
2.Location
Scaffold: PH01000022
Strand: +
| Region | Start | End |
| gene | 811612 | 821027 |
| mRNA | 811612 | 821027 |
| exon | 811612 | 812214 |
| exon | 812847 | 812916 |
| exon | 813001 | 813510 |
| exon | 813605 | 813790 |
| exon | 813900 | 814013 |
| exon | 814613 | 814696 |
| exon | 814804 | 814855 |
| exon | 815560 | 815643 |
| exon | 815766 | 816184 |
| exon | 816338 | 816399 |
| exon | 817165 | 817234 |
| exon | 817586 | 817666 |
| exon | 818412 | 818548 |
| exon | 818881 | 818998 |
| exon | 819433 | 821027 |
| CDS | 812171 | 812214 |
| CDS | 812847 | 812916 |
| CDS | 813001 | 813510 |
| CDS | 813605 | 813790 |
| CDS | 813900 | 814013 |
| CDS | 814613 | 814696 |
| CDS | 814804 | 814855 |
| CDS | 815560 | 815643 |
| CDS | 815766 | 816184 |
| CDS | 816338 | 816399 |
| CDS | 817165 | 817234 |
| CDS | 817586 | 817666 |
| CDS | 818412 | 818548 |
| CDS | 818881 | 818998 |
| CDS | 819433 | 819696 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001545 | regulation of Rab GTPase activity, PLATZ Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00566.17 | RabGAP-TBC | 204 | 310 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005097 | Rab GTPase activator activity |
| GO:0005622 | intracellular |
| GO:0032313 | regulation of Rab GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.