Gene details

Annotation of co-expression genes

PH01000022G1870's details annotation

1.Annotation

ICBR annotation: HECT-domain domain containing protein, expressed

Blast result AT5G02880 : 0.00E+00
Blast annotation: ubiquitin-protein ligase 4

2.Location

Scaffold: PH01000022
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000958	Ubiquitin_mediated_proteolysis cellular protein modification process, intracellular, ubiquitin-protein ligase activity, Fatty_acid_biosynthesis 3-oxoacyl-[acyl-carrier-protein] synthase activity,
coexpression network	CFinderM001074	SAGA complex, transcription cofactor activity, cellular protein modification process, Ubiquitin_mediated_proteolysis ubiquitin-protein ligase activity, 3-oxoacyl-[acyl-carrier-protein] synthase activity, Fatty_acid_biosynthesis intracellular, protein metabolic process, lipid biosynthetic process, binding,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00632.24	HECT	1065	1410

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ubiquitin mediated proteolysis	E3 ubiquitin-protein ligase TRIP12 [EC:6.3.2.19]	ko04120	K10590

10.Gene Ontology

GO Accession	GO Annotation
GO:0004842	ubiquitin-protein ligase activity
GO:0005488	binding
GO:0005622	intracellular
GO:0006464	cellular protein modification process

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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