PH01000022G2160's details annotation
1.Annotation
ICBR annotation: lipin, N-terminal conserved region family protein, expressed
Blast result AT3G09560 : 0.00E+00
Blast annotation: Lipin family protein
2.Location
Scaffold: PH01000022
Strand: +
| Region | Start | End |
| gene | 1486238 | 1493667 |
| mRNA | 1486238 | 1493667 |
| exon | 1486238 | 1487372 |
| exon | 1487983 | 1489624 |
| exon | 1489691 | 1490274 |
| exon | 1490352 | 1490425 |
| exon | 1491679 | 1491763 |
| exon | 1491877 | 1491963 |
| exon | 1492209 | 1492281 |
| exon | 1492510 | 1492553 |
| exon | 1492976 | 1493104 |
| exon | 1493191 | 1493289 |
| exon | 1493465 | 1493667 |
| CDS | 1487097 | 1487372 |
| CDS | 1487983 | 1489624 |
| CDS | 1489691 | 1490274 |
| CDS | 1490352 | 1490425 |
| CDS | 1491679 | 1491763 |
| CDS | 1491877 | 1491963 |
| CDS | 1492209 | 1492281 |
| CDS | 1492510 | 1492553 |
| CDS | 1492976 | 1493104 |
| CDS | 1493191 | 1493289 |
| CDS | 1493465 | 1493497 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000194 | Group-Pl-3 (from iTAK) regulation of Rab GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04571.13 | Lipin_N | 89 | 170 |
| PF16876.4 | Lipin_mid | 642 | 732 |
| PF08235.12 | LNS2 | 801 | 1024 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.