Annotation of co-expression genes

PH01000023G1030's details annotation

1.Annotation

ICBR annotation: AP2 domain containing protein, expressed

Blast result AT2G44940 : 8.30E-35
Blast annotation: Integrase-type DNA-binding superfamily protein

2.Location

Scaffold: PH01000023
Strand: -

RegionStartEnd
gene683872685067
mRNA683872685067
exon683872685067
CDS684182685003

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000782cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
chaperone binding,
AP2/ERF-ERF Transcription_Regulator(from iTAK)
ERF Transcription_Regulator(from PlantTFDB)
integral to membrane,
membrane,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)AP2/ERF-ERF
Transcription_Regulator(from PlantTFDB)ERF

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00847.19AP2102152

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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