PH01000023G1870's details annotation
1.Annotation
ICBR annotation: Alg9-like mannosyltransferase protein, putative, expressed
Blast result AT1G02145 : 6.80E-41
Blast annotation: homolog of asparagine-linked glycosylation 12
2.Location
Scaffold: PH01000023
Strand: +
| Region | Start | End |
| gene | 1181559 | 1186471 |
| mRNA | 1181559 | 1186471 |
| exon | 1181559 | 1182142 |
| exon | 1182274 | 1182359 |
| exon | 1183666 | 1183707 |
| exon | 1183812 | 1183857 |
| exon | 1184108 | 1184194 |
| exon | 1184305 | 1184360 |
| exon | 1185305 | 1185363 |
| exon | 1185578 | 1186471 |
| CDS | 1182094 | 1182142 |
| CDS | 1182274 | 1182359 |
| CDS | 1183666 | 1183707 |
| CDS | 1183812 | 1183857 |
| CDS | 1184108 | 1184194 |
| CDS | 1184305 | 1184360 |
| CDS | 1185305 | 1185363 |
| CDS | 1185578 | 1185632 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03901.16 | Glyco_transf_22 | 29 | 120 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006506 | GPI anchor biosynthetic process |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| GO:0031227 | intrinsic to endoplasmic reticulum membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.