Annotation of co-expression genes

PH01000023G2670's details annotation

1.Annotation

ICBR annotation: ACBP4, putative, expressed

Blast result AT3G05420 : 2.90E-35
Blast annotation: acyl-CoA binding protein 4

2.Location

Scaffold: PH01000023
Strand: -

RegionStartEnd
gene17422401750003
mRNA17422401750003
exon17422401742561
exon17426601742794
exon17440271744116
exon17447111744788
exon17448881745088
exon17451491745170
exon17453031745374
exon17458921745962
exon17477141747821
exon17478921748023
exon17482111748236
exon17485351748647
exon17488621750003
CDS17425051742561
CDS17426601742794
CDS17440271744116
CDS17447111744788
CDS17448881745088
CDS17451491745170
CDS17453031745374
CDS17458921745962
CDS17477141747821
CDS17478921748023
CDS17482111748236
CDS17485351748647
CDS17488621748992

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05285.11SDA182170
PF09767.8DUF2053372410

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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