PH01000024G0390's details annotation
1.Annotation
ICBR annotation: ubiquitin conjugating enzyme protein, putative, expressed
Blast result AT2G33770 : 0.00E+00
Blast annotation: phosphate 2
2.Location
Scaffold: PH01000024
Strand: +
| Region | Start | End |
| gene | 278308 | 284448 |
| mRNA | 278308 | 284448 |
| exon | 278308 | 280149 |
| exon | 280237 | 280284 |
| exon | 280318 | 280449 |
| exon | 280535 | 280678 |
| exon | 280756 | 280959 |
| exon | 281073 | 281136 |
| exon | 283218 | 283357 |
| exon | 283453 | 283764 |
| exon | 284087 | 284448 |
| CDS | 278716 | 280149 |
| CDS | 280237 | 280284 |
| CDS | 280318 | 280449 |
| CDS | 280535 | 280678 |
| CDS | 280756 | 280959 |
| CDS | 281073 | 281136 |
| CDS | 283218 | 283357 |
| CDS | 283453 | 283764 |
| CDS | 284087 | 284314 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000335 | acid-amino acid ligase activity, peptide-methionine_(R)-S-oxide_reductase_activity Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 663 | 796 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19] | ko04120 | K10581 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.