PH01000024G0980's details annotation
1.Annotation
ICBR annotation: dynamin family protein, putative, expressed
Blast result AT5G42080 : 0.00E+00
Blast annotation: dynamin-like protein
2.Location
Scaffold: PH01000024
Strand: +
| Region | Start | End |
| gene | 665039 | 672417 |
| mRNA | 665039 | 672417 |
| exon | 665039 | 665820 |
| exon | 666259 | 666322 |
| exon | 666423 | 666527 |
| exon | 666863 | 666964 |
| exon | 667236 | 667286 |
| exon | 667341 | 667441 |
| exon | 667547 | 667637 |
| exon | 668016 | 668080 |
| exon | 668554 | 668673 |
| exon | 669324 | 669394 |
| exon | 670136 | 670361 |
| exon | 670489 | 670539 |
| exon | 670965 | 671193 |
| exon | 671299 | 671330 |
| exon | 671947 | 672417 |
| CDS | 665692 | 665820 |
| CDS | 666259 | 666322 |
| CDS | 666423 | 666527 |
| CDS | 666863 | 666964 |
| CDS | 667236 | 667286 |
| CDS | 667341 | 667441 |
| CDS | 667547 | 667637 |
| CDS | 668016 | 668080 |
| CDS | 668554 | 668673 |
| CDS | 669324 | 669394 |
| CDS | 670136 | 670361 |
| CDS | 670489 | 670539 |
| CDS | 670965 | 671193 |
| CDS | 671299 | 671330 |
| CDS | 671947 | 672075 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001356 | STE_STE20-YSK (from iTAK) binding, Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis GPI anchor metabolic process, regulation of Rab GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00350.22 | Dynamin_N | 39 | 214 |
| PF01031.19 | Dynamin_M | 223 | 490 |
| PF02212.17 | GED | 515 | 607 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.