PH01000024G2010's details annotation
1.Annotation
ICBR annotation: E3 ubiquitin ligase, putative, expressed
Blast result AT3G18290 : 0
Blast annotation: zinc finger protein-related
2.Location
Scaffold: PH01000024
Strand: -
| Region | Start | End |
| gene | 1405187 | 1417635 |
| mRNA | 1405187 | 1417635 |
| exon | 1405187 | 1405682 |
| exon | 1406031 | 1406435 |
| exon | 1408277 | 1408348 |
| exon | 1408895 | 1408954 |
| exon | 1409039 | 1409088 |
| exon | 1410783 | 1410821 |
| exon | 1410865 | 1411010 |
| exon | 1411115 | 1411286 |
| exon | 1411932 | 1412948 |
| exon | 1413267 | 1413351 |
| exon | 1413570 | 1413795 |
| exon | 1414320 | 1414669 |
| exon | 1414747 | 1414941 |
| exon | 1416050 | 1416259 |
| exon | 1417230 | 1417635 |
| CDS | 1405305 | 1405682 |
| CDS | 1406031 | 1406435 |
| CDS | 1408277 | 1408348 |
| CDS | 1408895 | 1408954 |
| CDS | 1409039 | 1409088 |
| CDS | 1410783 | 1410821 |
| CDS | 1410865 | 1411010 |
| CDS | 1411115 | 1411286 |
| CDS | 1411932 | 1412948 |
| CDS | 1413267 | 1413351 |
| CDS | 1413570 | 1413795 |
| CDS | 1414320 | 1414669 |
| CDS | 1414747 | 1414941 |
| CDS | 1416050 | 1416259 |
| CDS | 1417230 | 1417496 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01814.22 | Hemerythrin | 39 | 164 |
| PF01814.22 | Hemerythrin | 289 | 419 |
| PF01814.22 | Hemerythrin | 541 | 698 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.