PH01000024G2290's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000024
Strand: -
| Region | Start | End |
| gene | 1570106 | 1577805 |
| mRNA | 1570106 | 1577805 |
| exon | 1570106 | 1570269 |
| exon | 1570747 | 1570848 |
| exon | 1571050 | 1571130 |
| exon | 1571236 | 1571331 |
| exon | 1572513 | 1572689 |
| exon | 1572999 | 1573241 |
| exon | 1575285 | 1575314 |
| exon | 1575784 | 1575792 |
| exon | 1576384 | 1576543 |
| exon | 1576905 | 1576946 |
| exon | 1577199 | 1577805 |
| CDS | 1570225 | 1570269 |
| CDS | 1570747 | 1570848 |
| CDS | 1571050 | 1571130 |
| CDS | 1571236 | 1571331 |
| CDS | 1572513 | 1572689 |
| CDS | 1572999 | 1573241 |
| CDS | 1575285 | 1575314 |
| CDS | 1575784 | 1575792 |
| CDS | 1576384 | 1576543 |
| CDS | 1576905 | 1576946 |
| CDS | 1577199 | 1577251 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12678.6 | zf-rbx1 | 308 | 331 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.