PH01000025G1120's details annotation
1.Annotation
ICBR annotation: calcineurin B, putative, expressed
Blast result AT4G26570 : 6.00E-109
Blast annotation: calcineurin B-like 3
2.Location
Scaffold: PH01000025
Strand: +
| Region | Start | End |
| gene | 826218 | 832791 |
| mRNA | 826218 | 832791 |
| exon | 826218 | 828771 |
| exon | 828889 | 828971 |
| exon | 829126 | 829185 |
| exon | 829296 | 829355 |
| exon | 830574 | 830682 |
| exon | 831394 | 831446 |
| exon | 832082 | 832162 |
| exon | 832517 | 832791 |
| CDS | 828651 | 828771 |
| CDS | 828889 | 828971 |
| CDS | 829126 | 829185 |
| CDS | 829296 | 829355 |
| CDS | 830574 | 830682 |
| CDS | 831394 | 831446 |
| CDS | 832082 | 832162 |
| CDS | 832517 | 832633 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001382 | microtubule associated complex, microtubule-based movement, microtubule motor activity, RLK-Pelle_LRK10L-2 (from iTAK) Proteasome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13833.5 | EF-hand_8 | 63 | 109 |
| PF13499.5 | EF-hand_7 | 121 | 188 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.