PH01000025G1970's details annotation
1.Annotation
ICBR annotation: NAD dependent epimerase/dehydratase family domain containing protein, expressed
Blast result AT1G78570 : 5.00E-147
Blast annotation: rhamnose biosynthesis 1
2.Location
Scaffold: PH01000025
Strand: +
| Region | Start | End |
| gene | 1459984 | 1467625 |
| mRNA | 1459984 | 1467625 |
| exon | 1459984 | 1460323 |
| exon | 1460985 | 1461043 |
| exon | 1463754 | 1463780 |
| exon | 1464490 | 1464560 |
| exon | 1464713 | 1464776 |
| exon | 1464975 | 1465498 |
| exon | 1465627 | 1466141 |
| exon | 1466442 | 1466551 |
| exon | 1467270 | 1467625 |
| CDS | 1460161 | 1460323 |
| CDS | 1460985 | 1461043 |
| CDS | 1463754 | 1463780 |
| CDS | 1464490 | 1464560 |
| CDS | 1464713 | 1464776 |
| CDS | 1464975 | 1465498 |
| CDS | 1465627 | 1466141 |
| CDS | 1466442 | 1466551 |
| CDS | 1467270 | 1467281 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05879.11 | RHD3 | 74 | 134 |
| PF16363.4 | GDP_Man_Dehyd | 140 | 305 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0044237 | cellular metabolic process |
| GO:0050662 | coenzyme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.