PH01000025G1990's details annotation
1.Annotation
ICBR annotation: LSTK-1-like kinase, putative, expressed
Blast result AT3G04810 : 5.00E-135
Blast annotation: NIMA-related kinase 2
2.Location
Scaffold: PH01000025
Strand: -
| Region | Start | End |
| gene | 1485558 | 1492702 |
| mRNA | 1485558 | 1492702 |
| exon | 1485558 | 1486414 |
| exon | 1486741 | 1486832 |
| exon | 1487838 | 1488307 |
| exon | 1488645 | 1489100 |
| exon | 1489870 | 1489919 |
| exon | 1489996 | 1490077 |
| exon | 1490155 | 1490204 |
| exon | 1490296 | 1490338 |
| exon | 1490434 | 1490514 |
| exon | 1490606 | 1490651 |
| exon | 1490738 | 1490784 |
| exon | 1490890 | 1490955 |
| exon | 1491250 | 1491316 |
| exon | 1491408 | 1491504 |
| exon | 1491561 | 1492702 |
| CDS | 1486197 | 1486414 |
| CDS | 1486741 | 1486832 |
| CDS | 1487838 | 1488307 |
| CDS | 1488645 | 1489100 |
| CDS | 1489870 | 1489919 |
| CDS | 1489996 | 1490077 |
| CDS | 1490155 | 1490204 |
| CDS | 1490296 | 1490338 |
| CDS | 1490434 | 1490514 |
| CDS | 1490606 | 1490651 |
| CDS | 1490738 | 1490784 |
| CDS | 1490890 | 1490955 |
| CDS | 1491250 | 1491316 |
| CDS | 1491408 | 1491504 |
| CDS | 1491561 | 1491633 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 32 | 241 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.