PH01000025G2120's details annotation
1.Annotation
ICBR annotation: tesmin/TSO1-like CXC domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000025
Strand: -
| Region | Start | End |
| gene | 1569883 | 1576753 |
| mRNA | 1569883 | 1576753 |
| exon | 1569883 | 1570974 |
| exon | 1574171 | 1574234 |
| exon | 1574317 | 1574409 |
| exon | 1576142 | 1576207 |
| exon | 1576313 | 1576753 |
| CDS | 1570397 | 1570974 |
| CDS | 1574171 | 1574234 |
| CDS | 1574317 | 1574409 |
| CDS | 1576142 | 1576207 |
| CDS | 1576313 | 1576543 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | CPP |
| Transcription_Regulator(from PlantTFDB) | CPP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03638.14 | TCR | 112 | 146 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.