Annotation of co-expression genes

PH01000026G0020's details annotation

1.Annotation

ICBR annotation: trehalose-6-phosphate synthase, putative, expressed

Blast result AT2G18700 : 0.00E+00
Blast annotation: trehalose phosphatase/synthase 11

2.Location

Scaffold: PH01000026
Strand: +

RegionStartEnd
gene981713650
mRNA981713650
exon981711967
exon1243412707
exon1310013650
CDS1000711967
CDS1243412707
CDS1310013423

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001363GT20 GlycosylTransferases
mitochondrial inner membrane,
Porphyrin_and_chlorophyll_metabolism
Starch_and_sucrose_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT20

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00982.20Glyco_transf_2054536
PF02358.15Trehalose_PPase586820

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismtrehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15;EC:3.1.3.12]ko00500K16055

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005992trehalose biosynthetic process
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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