Annotation of co-expression genes

PH01000026G0400's details annotation

1.Annotation

ICBR annotation: translation initiation factor IF-3, putative, expressed

Blast result AT2G24060 : 7.80E-47
Blast annotation: Translation initiation factor 3 protein

2.Location

Scaffold: PH01000026
Strand: -

RegionStartEnd
gene306670311067
mRNA306670311067
exon306670307389
exon307561307653
exon308113308185
exon308585308618
exon308705308760
exon309319309380
exon309878309937
exon310058310097
exon310422311067
CDS307168307389
CDS307561307653
CDS308113308185
CDS308585308618
CDS308705308760
CDS309319309380
CDS309878309937
CDS310058310097
CDS310422310741

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000482translation release factor activity,
translation release factor activity, codon specific,
translational termination,
translational initiation,
translation initiation factor activity,
coexpression networkCFinderM000676TKL-Pl-4 (from iTAK)
integral_component_of_peroxisomal_membrane
peroxisome_fission
translational initiation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05198.15IF3_N108172
PF00707.21IF3_C185266

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003743translation initiation factor activity
GO:0006413translational initiation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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