Annotation of co-expression genes

PH01000026G0660's details annotation

1.Annotation

ICBR annotation: two-component response regulator, putative, expressed

Blast result AT2G25180 : 3.50E-76
Blast annotation: response regulator 12

2.Location

Scaffold: PH01000026
Strand: -

RegionStartEnd
gene476746486010
mRNA476746486010
exon476746478345
exon478599478653
exon479013480215
exon480763480890
exon480980481393
exon481592481805
exon482891482976
exon483981486010
CDS477399478345
CDS478599478653
CDS479013480215
CDS480763480890
CDS480980481393
CDS481592481805
CDS482891482976
CDS483981484119

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Others
Transcription_Regulator(from PlantTFDB)ARR-B

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00072.23Response_reg96181
PF07893.12DUF16688891040

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Plant hormone signal transductiontwo-component response regulator ARR-B familyko04075K14491

10.Gene Ontology

GO AccessionGO Annotation
GO:0000156phosphorelay response regulator activity
GO:0000160phosphorelay signal transduction system
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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