PH01000026G0730's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G39630 : 2.50E-25
Blast annotation: -
2.Location
Scaffold: PH01000026
Strand: -
| Region | Start | End |
| gene | 558395 | 562241 |
| mRNA | 558395 | 562241 |
| exon | 558395 | 558972 |
| exon | 559195 | 559327 |
| exon | 559471 | 559533 |
| exon | 559614 | 559660 |
| exon | 559761 | 559932 |
| exon | 561351 | 561593 |
| exon | 561678 | 562241 |
| CDS | 558950 | 558972 |
| CDS | 559195 | 559327 |
| CDS | 559471 | 559533 |
| CDS | 559614 | 559660 |
| CDS | 559761 | 559932 |
| CDS | 561351 | 561593 |
| CDS | 561678 | 561773 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001014 | SET Transcription_Regulator(from iTAK) endoplasmic reticulum, nucleus, ubiquitin ligase complex, histone_methylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.