PH01000026G1560's details annotation
1.Annotation
ICBR annotation: ANTH, putative, expressed
Blast result AT5G35200 : 3.00E-156
Blast annotation: ENTH/ANTH/VHS superfamily protein
2.Location
Scaffold: PH01000026
Strand: +
| Region | Start | End |
| gene | 1136634 | 1141172 |
| mRNA | 1136634 | 1141172 |
| exon | 1136634 | 1137250 |
| exon | 1137371 | 1137443 |
| exon | 1137523 | 1137620 |
| exon | 1138121 | 1138262 |
| exon | 1138363 | 1138463 |
| exon | 1138818 | 1138901 |
| exon | 1139013 | 1139063 |
| exon | 1139149 | 1139214 |
| exon | 1139305 | 1139370 |
| exon | 1139523 | 1139603 |
| exon | 1139700 | 1139777 |
| exon | 1140014 | 1140163 |
| exon | 1140242 | 1140317 |
| exon | 1140419 | 1140534 |
| exon | 1140613 | 1141172 |
| CDS | 1137158 | 1137250 |
| CDS | 1137371 | 1137443 |
| CDS | 1137523 | 1137620 |
| CDS | 1138121 | 1138262 |
| CDS | 1138363 | 1138463 |
| CDS | 1138818 | 1138901 |
| CDS | 1139013 | 1139063 |
| CDS | 1139149 | 1139214 |
| CDS | 1139305 | 1139370 |
| CDS | 1139523 | 1139603 |
| CDS | 1139700 | 1139777 |
| CDS | 1140014 | 1140163 |
| CDS | 1140242 | 1140317 |
| CDS | 1140419 | 1140534 |
| CDS | 1140613 | 1141086 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000228 | Arp2/3_protein_complex Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization, cytoskeleton, clathrin_coat ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) clathrin_coat_assembly response to hormone stimulus, 1-phosphatidylinositol_binding clathrin_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07651.15 | ANTH | 32 | 300 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005543 | phospholipid binding |
| GO:0005545 | 1-phosphatidylinositol binding |
| GO:0030118 | clathrin coat |
| GO:0030276 | clathrin binding |
| GO:0048268 | clathrin coat assembly |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.