Annotation of co-expression genes

PH01000026G1860's details annotation

1.Annotation

ICBR annotation: PCNA - Putative DNA replicative polymerase clamp, expressed

Blast result AT1G07370 : 2.00E-45
Blast annotation: proliferating cellular nuclear antigen 1

2.Location

Scaffold: PH01000026
Strand: -

RegionStartEnd
gene13724231376558
mRNA13724231376558
exon13724231374262
exon13749731375144
exon13761951376558
CDS13740411374262
CDS13749731375144
CDS13761951376235

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02747.14PCNA_C38135

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
DNA replicationproliferating cell nuclear antigenko03030K04802
Base excision repairproliferating cell nuclear antigenko03410K04802
Nucleotide excision repairproliferating cell nuclear antigenko03420K04802
Mismatch repairproliferating cell nuclear antigenko03430K04802

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0006275regulation of DNA replication
GO:0030337DNA polymerase processivity factor activity
GO:0043626PCNA complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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