Annotation of co-expression genes

PH01000026G2110's details annotation

1.Annotation

ICBR annotation: hydrolase, NUDIX family, domain containing protein, expressed

Blast result AT5G13570 : 3.70E-78
Blast annotation: decapping 2

2.Location

Scaffold: PH01000026
Strand: -

RegionStartEnd
gene15061431510999
mRNA15061431510999
exon15061431506256
exon15074161507568
exon15091291509254
exon15096011509728
exon15098591510010
exon15100881510999
CDS15061911506256
CDS15074161507568
CDS15091291509254
CDS15096011509728
CDS15098591510010
CDS15100881510167

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001194bZIP Transcription_Regulator(from PlantTFDB)
RNA_degradation
sequence-specific DNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05026.12DCP220102
PF00293.27NUDIX127216

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA degradationmRNA-decapping enzyme subunit 2 [EC:3.6.1.62]ko03018K12613

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0016787hydrolase activity
GO:0030145manganese ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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