PH01000026G2380's details annotation
1.Annotation
ICBR annotation: transcription factor jumonji, putative, expressed
Blast result AT1G08620 : 0.00E+00
Blast annotation: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
2.Location
Scaffold: PH01000026
Strand: -
| Region | Start | End |
| gene | 1753618 | 1760824 |
| mRNA | 1753618 | 1760824 |
| exon | 1753618 | 1755136 |
| exon | 1755431 | 1755628 |
| exon | 1755706 | 1755809 |
| exon | 1756083 | 1757478 |
| exon | 1757562 | 1757930 |
| exon | 1758593 | 1758754 |
| exon | 1758886 | 1759110 |
| exon | 1759453 | 1759923 |
| exon | 1760030 | 1760107 |
| exon | 1760187 | 1760267 |
| exon | 1760371 | 1760824 |
| CDS | 1754873 | 1755136 |
| CDS | 1755431 | 1755628 |
| CDS | 1755706 | 1755809 |
| CDS | 1756083 | 1757478 |
| CDS | 1757562 | 1757930 |
| CDS | 1758593 | 1758754 |
| CDS | 1758886 | 1759110 |
| CDS | 1759453 | 1759923 |
| CDS | 1760030 | 1760107 |
| CDS | 1760187 | 1760267 |
| CDS | 1760371 | 1760709 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000315 | AGC_NDR (from iTAK) Jumonji Transcription_Regulator(from iTAK) phagocytosis, phosphorylation, cytoskeleton, Spliceosome |
| coexpression network | CFinderM000316 | RLK-Pelle_RLCK-IV (from iTAK) AGC_NDR (from iTAK) Jumonji Transcription_Regulator(from iTAK) signal transducer activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Jumonji |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02375.16 | JmjN | 159 | 192 |
| PF02373.21 | JmjC | 386 | 502 |
| PF02928.15 | zf-C5HC2 | 608 | 658 |
| PF05964.13 | FYRN | 1021 | 1064 |
| PF05965.13 | FYRC | 1071 | 1158 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.