PH01000027G0270's details annotation
1.Annotation
ICBR annotation: alpha-1,2-fucosidase, putative, expressed
Blast result AT4G34260 : 0.00E+00
Blast annotation: 1,2-alpha-L-fucosidases
2.Location
Scaffold: PH01000027
Strand: +
| Region | Start | End |
| gene | 188348 | 196967 |
| mRNA | 188348 | 196967 |
| exon | 188348 | 189071 |
| exon | 189339 | 189484 |
| exon | 190249 | 191099 |
| exon | 192175 | 192307 |
| exon | 192809 | 192967 |
| exon | 194725 | 194955 |
| exon | 195114 | 195215 |
| exon | 195314 | 195449 |
| exon | 196090 | 196285 |
| exon | 196498 | 196967 |
| CDS | 188867 | 189071 |
| CDS | 189339 | 189484 |
| CDS | 190249 | 191099 |
| CDS | 192175 | 192307 |
| CDS | 192809 | 192967 |
| CDS | 194725 | 194955 |
| CDS | 195114 | 195215 |
| CDS | 195314 | 195449 |
| CDS | 196090 | 196285 |
| CDS | 196498 | 196807 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH95 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14498.5 | Glyco_hyd_65N_2 | 34 | 277 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Other glycan degradation | alpha-L-fucosidase 2 [EC:3.2.1.51] | ko00511 | K15923 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004560 | alpha-L-fucosidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.