PH01000028G0380's details annotation
1.Annotation
ICBR annotation: aspartyl protease family protein, putative, expressed
Blast result AT4G16563 : 1.80E-57
Blast annotation: Eukaryotic aspartyl protease family protein
2.Location
Scaffold: PH01000028
Strand: +
| Region | Start | End |
| gene | 279547 | 281870 |
| mRNA | 279547 | 281870 |
| exon | 279547 | 279803 |
| exon | 280413 | 281161 |
| exon | 281651 | 281870 |
| CDS | 279690 | 279803 |
| CDS | 280413 | 281161 |
| CDS | 281651 | 281780 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14541.5 | TAXi_C | 100 | 274 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.