PH01000028G1330's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G53800 : 2.90E-46
Blast annotation: -
2.Location
Scaffold: PH01000028
Strand: +
| Region | Start | End |
| gene | 881929 | 887076 |
| mRNA | 881929 | 887076 |
| exon | 881929 | 882857 |
| exon | 883160 | 883231 |
| exon | 884273 | 884318 |
| exon | 884970 | 885019 |
| exon | 885303 | 885416 |
| exon | 885747 | 885825 |
| exon | 886763 | 886834 |
| exon | 886922 | 887076 |
| CDS | 882313 | 882857 |
| CDS | 883160 | 883231 |
| CDS | 884273 | 884318 |
| CDS | 884970 | 885019 |
| CDS | 885303 | 885416 |
| CDS | 885747 | 885825 |
| CDS | 886763 | 886834 |
| CDS | 886922 | 886972 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000325 | HSF Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000326 | Basal_transcription_factors RNA-dependent DNA replication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.