PH01000028G2440's details annotation
1.Annotation
ICBR annotation: mRNA cap guanine-N7 methyltransferase 2, putative, expressed
Blast result AT3G52210 : 5.90E-70
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000028
Strand: -
| Region | Start | End |
| gene | 1553878 | 1557539 |
| mRNA | 1553878 | 1557539 |
| exon | 1553878 | 1554400 |
| exon | 1554484 | 1554581 |
| exon | 1554657 | 1554745 |
| exon | 1554951 | 1555019 |
| exon | 1555144 | 1555425 |
| exon | 1555978 | 1556128 |
| exon | 1556219 | 1556297 |
| exon | 1556978 | 1557539 |
| CDS | 1554281 | 1554400 |
| CDS | 1554484 | 1554581 |
| CDS | 1554657 | 1554745 |
| CDS | 1554951 | 1555019 |
| CDS | 1555144 | 1555425 |
| CDS | 1555978 | 1556128 |
| CDS | 1556219 | 1556297 |
| CDS | 1556978 | 1557292 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03291.15 | Pox_MCEL | 103 | 149 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] | ko03015 | K00565 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.