PH01000029G0500's details annotation
1.Annotation
ICBR annotation: proline-rich family protein, putative, expressed
Blast result AT2G26770 : 1.00E-104
Blast annotation: plectin-related
2.Location
Scaffold: PH01000029
Strand: -
| Region | Start | End |
| gene | 271977 | 276054 |
| mRNA | 271977 | 276054 |
| exon | 271977 | 272253 |
| exon | 272370 | 272519 |
| exon | 272927 | 273061 |
| exon | 273226 | 273284 |
| exon | 273757 | 273873 |
| exon | 274093 | 274270 |
| exon | 274366 | 274449 |
| exon | 274747 | 274815 |
| exon | 274999 | 275139 |
| exon | 275736 | 276054 |
| CDS | 272209 | 272253 |
| CDS | 272370 | 272519 |
| CDS | 272927 | 273061 |
| CDS | 273226 | 273284 |
| CDS | 273757 | 273873 |
| CDS | 274093 | 274270 |
| CDS | 274366 | 274449 |
| CDS | 274747 | 274815 |
| CDS | 274999 | 275139 |
| CDS | 275736 | 275738 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001078 | actin cytoskeleton, actin_filament_depolymerization actin binding, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16712.4 | SCAB_CC | 2 | 100 |
| PF16709.4 | SCAB-IgPH | 114 | 320 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.