Annotation of co-expression genes

PH01000029G0650's details annotation

1.Annotation

ICBR annotation: DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed

Blast result AT3G22320 : 1.80E-79
Blast annotation: Eukaryotic rpb5 RNA polymerase subunit family protein

2.Location

Scaffold: PH01000029
Strand: -

RegionStartEnd
gene369169375060
mRNA369169375060
exon369169369526
exon370129370242
exon370369370548
exon374382375060
CDS369401369526
CDS370129370242
CDS370369370548
CDS374382374816

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03871.13RNA_pol_Rpb5_N86168
PF01191.18RNA_pol_Rpb5_C211283

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Purine metabolismDNA-directed RNA polymerases I, II, and III subunit RPABCko00230K03013
Pyrimidine metabolismDNA-directed RNA polymerases I, II, and III subunit RPABCko00240K03013
RNA polymeraseDNA-directed RNA polymerases I, II, and III subunit RPABCko03020K03013

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO:0005634nucleus
GO:0006351transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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