PH01000029G0970's details annotation
1.Annotation
ICBR annotation: transcription factor, putative, expressed
Blast result AT5G06950 : 3.00E-115
Blast annotation: bZIP transcription factor family protein
2.Location
Scaffold: PH01000029
Strand: -
| Region | Start | End |
| gene | 588118 | 593244 |
| mRNA | 588118 | 593244 |
| exon | 588118 | 588221 |
| exon | 588308 | 588556 |
| exon | 588994 | 589265 |
| exon | 589803 | 589854 |
| exon | 589945 | 590022 |
| exon | 590354 | 590434 |
| exon | 590490 | 590567 |
| exon | 590943 | 590951 |
| exon | 591043 | 591243 |
| exon | 591353 | 591426 |
| exon | 591646 | 591749 |
| exon | 592776 | 593244 |
| CDS | 588129 | 588221 |
| CDS | 588308 | 588556 |
| CDS | 588994 | 589265 |
| CDS | 589803 | 589854 |
| CDS | 589945 | 590022 |
| CDS | 590354 | 590434 |
| CDS | 590490 | 590567 |
| CDS | 590943 | 590951 |
| CDS | 591043 | 591243 |
| CDS | 591353 | 591426 |
| CDS | 591646 | 591749 |
| CDS | 592776 | 592864 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 180 | 221 |
| PF14144.5 | DOG1 | 263 | 338 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | transcription factor TGA | ko04075 | K14431 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.