PH01000030G0390's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT5G46740 : 2.20E-49
Blast annotation: ubiquitin-specific protease 21
2.Location
Scaffold: PH01000030
Strand: -
| Region | Start | End |
| gene | 218758 | 228631 |
| mRNA | 218758 | 228631 |
| exon | 218758 | 219366 |
| exon | 219671 | 220046 |
| exon | 220330 | 220665 |
| exon | 220743 | 220943 |
| exon | 222001 | 222078 |
| exon | 222623 | 222691 |
| exon | 222955 | 223008 |
| exon | 223825 | 223929 |
| exon | 224163 | 224273 |
| exon | 225025 | 225111 |
| exon | 225217 | 225294 |
| exon | 225609 | 228631 |
| CDS | 219167 | 219366 |
| CDS | 219671 | 220046 |
| CDS | 220330 | 220665 |
| CDS | 220743 | 220943 |
| CDS | 222001 | 222078 |
| CDS | 222623 | 222691 |
| CDS | 222955 | 223008 |
| CDS | 223825 | 223929 |
| CDS | 224163 | 224273 |
| CDS | 225025 | 225111 |
| CDS | 225217 | 225294 |
| CDS | 225609 | 225656 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 219 | 383 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.