PH01000031G0840's details annotation
1.Annotation
ICBR annotation: ABC1 family domain containing protein, putative, expressed
Blast result AT4G24810 : 4.40E-92
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000031
Strand: -
| Region | Start | End |
| gene | 517991 | 524353 |
| mRNA | 517991 | 524353 |
| exon | 517991 | 518192 |
| exon | 518348 | 518492 |
| exon | 518680 | 518833 |
| exon | 519642 | 519752 |
| exon | 520546 | 520670 |
| exon | 522322 | 522450 |
| exon | 522539 | 522586 |
| exon | 522785 | 522979 |
| exon | 523211 | 523339 |
| exon | 523857 | 524353 |
| CDS | 518110 | 518192 |
| CDS | 518348 | 518492 |
| CDS | 518680 | 518833 |
| CDS | 519642 | 519752 |
| CDS | 520546 | 520670 |
| CDS | 522322 | 522450 |
| CDS | 522539 | 522586 |
| CDS | 522785 | 522979 |
| CDS | 523211 | 523339 |
| CDS | 523857 | 523976 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03109.15 | ABC1 | 124 | 242 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.