PH01000032G0530's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G54730 : 1.00E-114
Blast annotation: homolog of yeast autophagy 18 (ATG18) F
2.Location
Scaffold: PH01000032
Strand: -
| Region | Start | End |
| gene | 320231 | 326577 |
| mRNA | 320231 | 326577 |
| exon | 320231 | 321548 |
| exon | 321743 | 321909 |
| exon | 322011 | 322841 |
| exon | 322917 | 323153 |
| exon | 323843 | 324259 |
| exon | 324335 | 324796 |
| exon | 325759 | 326577 |
| CDS | 321389 | 321548 |
| CDS | 321743 | 321909 |
| CDS | 322011 | 322841 |
| CDS | 322917 | 323153 |
| CDS | 323843 | 324259 |
| CDS | 324335 | 324796 |
| CDS | 325759 | 325947 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000819 | katanin_complex microtubule_severing cellulose biosynthetic process, microtubule binding, cellulose synthase (UDP-forming) activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12490.7 | BCAS3 | 516 | 754 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.