PH01000033G0230's details annotation
1.Annotation
ICBR annotation: signal recognition particle 19 kDa protein, putative, expressed
Blast result AT1G48160 : 1.40E-43
Blast annotation: signal recognition particle 19 kDa protein, putative / SRP19, putative
2.Location
Scaffold: PH01000033
Strand: -
| Region | Start | End |
| gene | 144456 | 146180 |
| mRNA | 144456 | 146180 |
| exon | 144456 | 144669 |
| exon | 144790 | 146180 |
| CDS | 144547 | 144669 |
| CDS | 144790 | 144978 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000256 | signal recognition particle, proton-transporting two-sector ATPase complex, proton-transporting domain, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01922.16 | SRP19 | 17 | 111 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein export | signal recognition particle subunit SRP19 | ko03060 | K03105 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane |
| GO:0008312 | 7S RNA binding |
| GO:0048500 | signal recognition particle |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.