PH01000033G2380's details annotation
1.Annotation
ICBR annotation: IN2-1 protein, putative, expressed
Blast result AT3G55040 : 7.30E-28
Blast annotation: glutathione transferase lambda 2
2.Location
Scaffold: PH01000033
Strand: +
| Region | Start | End |
| gene | 1560244 | 1566277 |
| mRNA | 1560244 | 1566277 |
| exon | 1560244 | 1560584 |
| exon | 1561220 | 1561492 |
| exon | 1561888 | 1562279 |
| exon | 1562314 | 1562350 |
| exon | 1562974 | 1563496 |
| exon | 1563928 | 1564042 |
| exon | 1564643 | 1564787 |
| exon | 1565280 | 1565363 |
| exon | 1565442 | 1565540 |
| exon | 1565629 | 1566277 |
| CDS | 1560534 | 1560584 |
| CDS | 1561220 | 1561492 |
| CDS | 1561888 | 1562279 |
| CDS | 1562314 | 1562350 |
| CDS | 1562974 | 1563496 |
| CDS | 1563928 | 1564042 |
| CDS | 1564643 | 1564787 |
| CDS | 1565280 | 1565363 |
| CDS | 1565442 | 1565540 |
| CDS | 1565629 | 1565748 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000420 | Protein_export defense response, signal recognition particle, 7S RNA binding, ADP_binding SRP-dependent cotranslational protein targeting to membrane, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000708 | Rab GDP-dissociation inhibitor activity, RLK-Pelle_DLSV (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13417.5 | GST_N_3 | 517 | 569 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.