PH01000035G2090's details annotation
1.Annotation
ICBR annotation: peptide transporter PTR2, putative
Blast result AT3G21670 : 2.80E-72
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000035
Strand: +
| Region | Start | End |
| gene | 1422070 | 1426417 |
| mRNA | 1422070 | 1426417 |
| exon | 1422070 | 1422168 |
| exon | 1422276 | 1422399 |
| exon | 1422518 | 1422723 |
| exon | 1422843 | 1422895 |
| exon | 1423283 | 1423435 |
| exon | 1425092 | 1426417 |
| CDS | 1422166 | 1422168 |
| CDS | 1422276 | 1422399 |
| CDS | 1422518 | 1422723 |
| CDS | 1422843 | 1422895 |
| CDS | 1423283 | 1423435 |
| CDS | 1425092 | 1425986 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00854.20 | PTR2 | 129 | 400 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.