PH01000036G1600's details annotation
1.Annotation
ICBR annotation: phosphate transporter 1, putative, expressed
Blast result AT3G23430 : 0.00E+00
Blast annotation: phosphate 1
2.Location
Scaffold: PH01000036
Strand: -
| Region | Start | End |
| gene | 1066554 | 1072118 |
| mRNA | 1066554 | 1072118 |
| exon | 1066554 | 1066818 |
| exon | 1066901 | 1067037 |
| exon | 1067122 | 1067403 |
| exon | 1067495 | 1067647 |
| exon | 1067732 | 1067776 |
| exon | 1067850 | 1067954 |
| exon | 1068050 | 1068293 |
| exon | 1068743 | 1068876 |
| exon | 1069010 | 1069084 |
| exon | 1069343 | 1069391 |
| exon | 1069872 | 1070235 |
| exon | 1070390 | 1070660 |
| exon | 1070784 | 1070837 |
| exon | 1070941 | 1072118 |
| CDS | 1066731 | 1066818 |
| CDS | 1066901 | 1067037 |
| CDS | 1067122 | 1067403 |
| CDS | 1067495 | 1067647 |
| CDS | 1067732 | 1067776 |
| CDS | 1067850 | 1067954 |
| CDS | 1068050 | 1068293 |
| CDS | 1068743 | 1068876 |
| CDS | 1069010 | 1069084 |
| CDS | 1069343 | 1069391 |
| CDS | 1069872 | 1070235 |
| CDS | 1070390 | 1070660 |
| CDS | 1070784 | 1070837 |
| CDS | 1070941 | 1071198 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000044 | integral to membrane, peptide-methionine_(R)-S-oxide_reductase_activity NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000335 | acid-amino acid ligase activity, peptide-methionine_(R)-S-oxide_reductase_activity Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03105.18 | SPX | 2 | 345 |
| PF03124.13 | EXS | 400 | 730 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.