PH01000036G1710's details annotation
1.Annotation
ICBR annotation: PB1 domain containing protein, expressed
Blast result AT5G09620 : 1.40E-34
Blast annotation: Octicosapeptide/Phox/Bem1p family protein
2.Location
Scaffold: PH01000036
Strand: +
| Region | Start | End |
| gene | 1146126 | 1150956 |
| mRNA | 1146126 | 1150956 |
| exon | 1146126 | 1149009 |
| exon | 1149200 | 1150956 |
| CDS | 1148572 | 1149009 |
| CDS | 1149200 | 1150030 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001643 | protein targeting, protein import, GT31 GlycosylTransferases Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00564.23 | PB1 | 51 | 127 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.