PH01000037G0690's details annotation
1.Annotation
ICBR annotation: DUF538 domain containing protein, putative, expressed
Blast result AT5G46230 : 3.60E-28
Blast annotation: Protein of unknown function, DUF538
2.Location
Scaffold: PH01000037
Strand: +
| Region | Start | End |
| gene | 506699 | 508161 |
| mRNA | 506699 | 508161 |
| exon | 506699 | 507342 |
| exon | 507717 | 508161 |
| CDS | 506976 | 507342 |
| CDS | 507717 | 507880 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000397 | clathrin_coat_assembly clathrin_coat clathrin_binding 1-phosphatidylinositol_binding Spliceosome phospholipid binding, |
| coexpression network | CFinderM001538 | oligopeptide transport, transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04398.11 | DUF538 | 2 | 94 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.