PH01000038G0030's details annotation
1.Annotation
ICBR annotation: tubulin--tyrosine ligase-like protein 12, putative, expressed
Blast result AT1G77550 : 3.10E-57
Blast annotation: tubulin-tyrosine ligases;tubulin-tyrosine ligases
2.Location
Scaffold: PH01000038
Strand: +
| Region | Start | End |
| gene | 26504 | 35553 |
| mRNA | 26504 | 35553 |
| exon | 26504 | 26920 |
| exon | 27029 | 27170 |
| exon | 27688 | 27945 |
| exon | 30040 | 30097 |
| exon | 30294 | 30380 |
| exon | 31587 | 31656 |
| exon | 32403 | 32604 |
| exon | 32688 | 32813 |
| exon | 32936 | 33041 |
| exon | 33084 | 33178 |
| exon | 33787 | 33856 |
| exon | 33917 | 35553 |
| CDS | 26913 | 26920 |
| CDS | 27029 | 27170 |
| CDS | 27688 | 27945 |
| CDS | 30040 | 30097 |
| CDS | 30294 | 30380 |
| CDS | 31587 | 31656 |
| CDS | 32403 | 32604 |
| CDS | 32688 | 32813 |
| CDS | 32936 | 33041 |
| CDS | 33084 | 33178 |
| CDS | 33787 | 33856 |
| CDS | 33917 | 34065 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001234 | Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.