Annotation of co-expression genes

PH01000038G0170's details annotation

1.Annotation

ICBR annotation: lipoxygenase protein, putative, expressed

Blast result AT1G17420 : 0.00E+00
Blast annotation: lipoxygenase 3

2.Location

Scaffold: PH01000038
Strand: +

RegionStartEnd
gene111181117335
mRNA111181117335
exon111181111726
exon112516112799
exon113459113696
exon114234114308
exon114776115099
exon115213115298
exon115426115533
exon115621115925
exon116040116138
exon116397116650
exon116701117335
CDS111333111726
CDS112516112799
CDS113459113696
CDS114234114308
CDS114776115099
CDS115213115298
CDS115426115533
CDS115621115925
CDS116040116138
CDS116397116650
CDS116701117167

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01477.22PLAT160223
PF00305.18Lipoxygenase236638
PF00305.18Lipoxygenase638723
PF00305.18Lipoxygenase742860

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Linoleic acid metabolismlipoxygenase [EC:1.13.11.12]ko00591K00454
alpha-Linolenic acid metabolismlipoxygenase [EC:1.13.11.12]ko00592K00454

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0005515protein binding
GO:0016165lipoxygenase activity
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872metal ion binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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