PH01000038G0390's details annotation
1.Annotation
ICBR annotation: glycosyl transferase, group 1 domain containing protein, expressed
Blast result AT1G16570 : 1.60E-74
Blast annotation: UDP-Glycosyltransferase superfamily protein
2.Location
Scaffold: PH01000038
Strand: -
| Region | Start | End |
| gene | 259431 | 268751 |
| mRNA | 259431 | 268751 |
| exon | 259431 | 259774 |
| exon | 260011 | 260139 |
| exon | 260304 | 260379 |
| exon | 260483 | 260535 |
| exon | 260617 | 260678 |
| exon | 260747 | 260857 |
| exon | 260938 | 261104 |
| exon | 261721 | 261810 |
| exon | 262382 | 262446 |
| exon | 262656 | 262711 |
| exon | 262893 | 262926 |
| exon | 263402 | 263609 |
| exon | 264361 | 264368 |
| exon | 265450 | 268751 |
| CDS | 259658 | 259774 |
| CDS | 260011 | 260139 |
| CDS | 260304 | 260379 |
| CDS | 260483 | 260535 |
| CDS | 260617 | 260678 |
| CDS | 260747 | 260857 |
| CDS | 260938 | 261104 |
| CDS | 261721 | 261810 |
| CDS | 262382 | 262446 |
| CDS | 262656 | 262711 |
| CDS | 262893 | 262926 |
| CDS | 263402 | 263609 |
| CDS | 264361 | 264368 |
| CDS | 265450 | 265626 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT33 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13692.5 | Glyco_trans_1_4 | 263 | 372 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | beta-1,4-mannosyltransferase [EC:2.4.1.142] | ko00510 | K03842 |
| Various types of N-glycan biosynthesis | beta-1,4-mannosyltransferase [EC:2.4.1.142] | ko00513 | K03842 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.