PH01000038G0590's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G14170 : 7.10E-86
Blast annotation: Plant protein of unknown function (DUF936)
2.Location
Scaffold: PH01000038
Strand: +
| Region | Start | End |
| gene | 427222 | 431681 |
| mRNA | 427222 | 431681 |
| exon | 427222 | 429297 |
| exon | 429683 | 430039 |
| exon | 430263 | 430354 |
| exon | 430631 | 431681 |
| CDS | 428650 | 429297 |
| CDS | 429683 | 430039 |
| CDS | 430263 | 430354 |
| CDS | 430631 | 431246 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000612 | photosystem II, extrinsic to membrane, oxygen evolving complex, RLK-Pelle_DLSV (from iTAK) ubiquitin ligase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06075.11 | DUF936 | 4 | 234 |
| PF06075.11 | DUF936 | 202 | 401 |
| PF06075.11 | DUF936 | 409 | 563 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.