PH01000038G0990's details annotation
1.Annotation
ICBR annotation: STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed
Blast result AT1G53730 : 0.00E+00
Blast annotation: STRUBBELIG-receptor family 6
2.Location
Scaffold: PH01000038
Strand: +
| Region | Start | End |
| gene | 713126 | 719372 |
| mRNA | 713126 | 719372 |
| exon | 713126 | 713381 |
| exon | 714477 | 714609 |
| exon | 714694 | 714765 |
| exon | 714851 | 714925 |
| exon | 715171 | 715242 |
| exon | 715353 | 715424 |
| exon | 715509 | 715574 |
| exon | 715652 | 715717 |
| exon | 715790 | 716082 |
| exon | 716178 | 716461 |
| exon | 717148 | 717419 |
| exon | 718120 | 718255 |
| exon | 718547 | 718677 |
| exon | 718778 | 718934 |
| exon | 719030 | 719372 |
| CDS | 713258 | 713381 |
| CDS | 714477 | 714609 |
| CDS | 714694 | 714765 |
| CDS | 714851 | 714925 |
| CDS | 715171 | 715242 |
| CDS | 715353 | 715424 |
| CDS | 715509 | 715574 |
| CDS | 715652 | 715717 |
| CDS | 715790 | 716082 |
| CDS | 716178 | 716461 |
| CDS | 717148 | 717419 |
| CDS | 718120 | 718255 |
| CDS | 718547 | 718677 |
| CDS | 718778 | 718934 |
| CDS | 719030 | 719170 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 39 | 79 |
| PF13855.5 | LRR_8 | 131 | 190 |
| PF07714.16 | Pkinase_Tyr | 398 | 667 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.