Annotation of co-expression genes

PH01000038G1340's details annotation

1.Annotation

ICBR annotation: dihydroflavonol-4-reductase, putative, expressed

Blast result AT4G33360 : 6.00E-130
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein

2.Location

Scaffold: PH01000038
Strand: +

RegionStartEnd
gene940494943067
mRNA940494943067
exon940494940824
exon941415941543
exon942050942214
exon942338942643
exon942692943067
CDS940567940824
CDS941415941543
CDS942050942214
CDS942338942643
CDS942692942889

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01370.20Epimerase3229

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Terpenoid backbone biosynthesisfarnesol dehydrogenase [EC:1.1.1.216]ko00900K15891
Sesquiterpenoid and triterpenoid biosynthesisfarnesol dehydrogenase [EC:1.1.1.216]ko00909K15891

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0044237cellular metabolic process
GO:0050662coenzyme binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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