PH01000039G0640's details annotation
1.Annotation
ICBR annotation: START domain containing protein, expressed
Blast result AT2G34710 : 0.00E+00
Blast annotation: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
2.Location
Scaffold: PH01000039
Strand: -
| Region | Start | End |
| gene | 456994 | 463945 |
| mRNA | 456994 | 463945 |
| exon | 456994 | 458312 |
| exon | 458410 | 458559 |
| exon | 458648 | 458753 |
| exon | 458941 | 459266 |
| exon | 459354 | 459488 |
| exon | 459572 | 459652 |
| exon | 459741 | 459929 |
| exon | 460040 | 460232 |
| exon | 460336 | 460442 |
| exon | 460559 | 460633 |
| exon | 460734 | 460889 |
| exon | 461105 | 461188 |
| exon | 461290 | 461403 |
| exon | 461481 | 461576 |
| exon | 461669 | 461759 |
| exon | 461878 | 461993 |
| exon | 462263 | 462422 |
| exon | 463391 | 463945 |
| CDS | 458166 | 458312 |
| CDS | 458410 | 458559 |
| CDS | 458648 | 458753 |
| CDS | 458941 | 459266 |
| CDS | 459354 | 459488 |
| CDS | 459572 | 459652 |
| CDS | 459741 | 459929 |
| CDS | 460040 | 460232 |
| CDS | 460336 | 460442 |
| CDS | 460559 | 460633 |
| CDS | 460734 | 460889 |
| CDS | 461105 | 461188 |
| CDS | 461290 | 461403 |
| CDS | 461481 | 461576 |
| CDS | 461669 | 461759 |
| CDS | 461878 | 461993 |
| CDS | 462263 | 462422 |
| CDS | 463391 | 463638 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 31 | 88 |
| PF01852.18 | START | 179 | 386 |
| PF08670.10 | MEKHLA | 714 | 856 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.