PH01000039G0760's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G05410 : 3.40E-59
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000039
Strand: -
| Region | Start | End |
| gene | 566186 | 575522 |
| mRNA | 566186 | 575522 |
| exon | 566186 | 567111 |
| exon | 567983 | 568205 |
| exon | 569628 | 569964 |
| exon | 571441 | 571624 |
| exon | 571658 | 571904 |
| exon | 572816 | 572875 |
| exon | 573274 | 573389 |
| exon | 573514 | 575522 |
| CDS | 567092 | 567111 |
| CDS | 567983 | 568205 |
| CDS | 569628 | 569964 |
| CDS | 571441 | 571624 |
| CDS | 571658 | 571904 |
| CDS | 572816 | 572875 |
| CDS | 573274 | 573389 |
| CDS | 573514 | 573745 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 349 | 384 |
| PF00400.31 | WD40 | 390 | 426 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.