Annotation of co-expression genes

PH01000039G0930's details annotation

1.Annotation

ICBR annotation: single myb histone, putative, expressed

Blast result AT1G49950 : 4.30E-55
Blast annotation: telomere repeat binding factor 1

2.Location

Scaffold: PH01000039
Strand: -

RegionStartEnd
gene690712697327
mRNA690712697327
exon690712691410
exon691538691624
exon692744693091
exon693742693825
exon695313695437
exon695897695925
exon696122696398
exon696510697327
CDS691396691410
CDS691538691624
CDS692744693091
CDS693742693825
CDS695313695437
CDS695897695925
CDS696122696398
CDS696510696576

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding555
PF00538.18Linker_histone123183

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000786nucleosome
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0005634nucleus
GO:0006334nucleosome assembly

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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