PH01000040G0090's details annotation
1.Annotation
ICBR annotation: hypothetical_protein
Blast result AT2G31870 : 4.00E-146
Blast annotation: Poly (ADP-ribose) glycohydrolase (PARG)
2.Location
Scaffold: PH01000040
Strand: +
| Region | Start | End |
| gene | 68944 | 75109 |
| mRNA | 68944 | 75109 |
| exon | 68944 | 69846 |
| exon | 69971 | 70175 |
| exon | 71465 | 71569 |
| exon | 72667 | 72785 |
| exon | 72951 | 73094 |
| exon | 73255 | 73324 |
| exon | 73690 | 73827 |
| exon | 73970 | 74032 |
| exon | 74455 | 75109 |
| CDS | 69323 | 69846 |
| CDS | 69971 | 70175 |
| CDS | 71465 | 71569 |
| CDS | 72667 | 72785 |
| CDS | 72951 | 73094 |
| CDS | 73255 | 73324 |
| CDS | 73690 | 73827 |
| CDS | 73970 | 74032 |
| CDS | 74455 | 74619 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000820 | poly(ADP-ribose) glycohydrolase activity, galactonolactone_dehydrogenase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05028.13 | PARG_cat | 84 | 451 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004649 | poly(ADP-ribose) glycohydrolase activity |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.