PH01000040G0210's details annotation
1.Annotation
ICBR annotation: vacuolar sorting protein, putative, expressed
Blast result AT3G19770 : 6.20E-46
Blast annotation: Vacuolar sorting protein 9 (VPS9) domain
2.Location
Scaffold: PH01000040
Strand: -
| Region | Start | End |
| gene | 126925 | 132185 |
| mRNA | 126925 | 132185 |
| exon | 126925 | 127771 |
| exon | 127947 | 128030 |
| exon | 128238 | 128320 |
| exon | 128775 | 129009 |
| exon | 130924 | 130995 |
| exon | 131234 | 131404 |
| exon | 131504 | 131669 |
| exon | 131872 | 132185 |
| CDS | 127679 | 127771 |
| CDS | 127947 | 128030 |
| CDS | 128238 | 128320 |
| CDS | 128775 | 129009 |
| CDS | 130924 | 130995 |
| CDS | 131234 | 131404 |
| CDS | 131504 | 131669 |
| CDS | 131872 | 131972 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02204.17 | VPS9 | 194 | 239 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.