PH01000040G0430's details annotation
1.Annotation
ICBR annotation: protein kinase family protein, putative, expressed
Blast result AT1G77280 : 5.40E-73
Blast annotation: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
2.Location
Scaffold: PH01000040
Strand: +
| Region | Start | End |
| gene | 272457 | 277257 |
| mRNA | 272457 | 277257 |
| exon | 272457 | 272835 |
| exon | 273379 | 273500 |
| exon | 273605 | 274552 |
| exon | 275248 | 275288 |
| exon | 275329 | 275495 |
| exon | 275726 | 275805 |
| exon | 275890 | 276037 |
| exon | 276249 | 276398 |
| exon | 276445 | 277257 |
| CDS | 272569 | 272835 |
| CDS | 273379 | 273500 |
| CDS | 273605 | 274552 |
| CDS | 275248 | 275288 |
| CDS | 275329 | 275495 |
| CDS | 275726 | 275805 |
| CDS | 275890 | 276037 |
| CDS | 276249 | 276398 |
| CDS | 276445 | 276723 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000394 | Endocytosis Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, purine ribonucleotide biosynthetic process, phosphatidylcholine metabolic process, RLK-Pelle_RLCK-VI (from iTAK) Ether_lipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 465 | 582 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.